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pubmed_search MCP server

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Education & sciencestdioCommunity

Repository-wide counts · Cached 2026-03-08

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Overview

The pubmed_search MCP server MCP server is a publicly available project. Review the upstream repository for installation instructions, supported tools, compatibility, permissions, and current maintenance status.

Configuration

Configuration, transport, authentication, and runtime requirements vary by project. Open the repository before connecting and use the smallest set of credentials and permissions required.

Open the pubmed_search MCP server repository to read the latest documentation.

KEEP EXPLORING

Compare source, connection, and authentication details before choosing an implementation.

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Deep Research

u14app

Community

Deep Research 使用强大的 AI 模型快速生成深入的研究报告。支持 SSE API 和 MCP 服务器。需要在 .env 文件中配置环境变量以设置服务器端的 API 密钥和相关参数。

Education & science

TorchLeet

Exorust

Community

TorchLeet provides 68 PyTorch problems from real ML/AI interviews at companies like Google, Meta, and Anthropic. It includes an AI Tutor MCP server that gives AI assistants access to problems, hints, prep plans, and learning paths with a no-spoilers teaching style.

Education & science

Zotero MCP

54yyyu

Community

用于 Zotero 的模型上下文协议（MCP）服务器，将您的 Zotero 研究库与 Claude 及其他 AI 助手连接。支持本地和 Web API 访问、PDF 注释提取以及高级搜索功能。完整本地 API 功能需要 Python 3.10 及 Zotero 7 以上版本。配置可以通过环境变量或 JSON 配置文件进行设置。

Education & science

mcp-brasil

mcp-brasil

Community

MCP Server for 70 Brazilian public data sources covering economy, legislation, transparency, judiciary, elections, environment, health, education, public security, and more. Some APIs require optional API keys configured via environment variables (e.g., TRANSPARENCIA_API_KEY, DATAJUD_API_KEY, META_ACCESS_TOKEN).

Education & science
FROM THE SOURCE

Repository README

Build-time snapshot · Retrieved 2026-10-05

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pubmed_search MCP server

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Components

Resources

The server implements a simple note storage system with:

  • Custom note:// URI scheme for accessing individual notes
  • Each note resource has a name, description and text/plain mimetype

Prompts

The server provides a single prompt:

  • summarize-notes: Creates summaries of all stored notes
    • Optional "style" argument to control detail level (brief/detailed)
    • Generates prompt combining all current notes with style preference

Tools

The server implements one tool:

  • add-note: Adds a new note to the server
    • Takes "name" and "content" as required string arguments
    • Updates server state and notifies clients of resource changes

Configuration

[TODO: Add configuration details specific to your implementation]

Quickstart

Install

Claude Desktop

On MacOS: ~/Library/Application\ Support/Claude/claude_desktop_config.json On Windows: %APPDATA%/Claude/claude_desktop_config.json

Development/Unpublished Servers Configuration ``` "mcpServers": { "pubmed_search": { "command": "uv", "args": [ "--directory", "/Users/nofuture/Documents/GitHub/pubmed_search", "run", "pubmed_search" ] } } ```
Published Servers Configuration ``` "mcpServers": { "pubmed_search": { "command": "uvx", "args": [ "pubmed_search" ] } } ```

Development

Building and Publishing

To prepare the package for distribution:

  1. Sync dependencies and update lockfile:
uv sync
  1. Build package distributions:
uv build

This will create source and wheel distributions in the dist/ directory.

  1. Publish to PyPI:
uv publish

Note: You'll need to set PyPI credentials via environment variables or command flags:

  • Token: --token or UV_PUBLISH_TOKEN
  • Or username/password: --username/UV_PUBLISH_USERNAME and --password/UV_PUBLISH_PASSWORD

Debugging

Since MCP servers run over stdio, debugging can be challenging. For the best debugging experience, we strongly recommend using the MCP Inspector.

You can launch the MCP Inspector via npm with this command:

npx @modelcontextprotocol/inspector uv --directory /Users/nofuture/Documents/GitHub/pubmed_search run pubmed-search

Upon launching, the Inspector will display a URL that you can access in your browser to begin debugging.